MLOC_38808 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains35.367941.412746.634440.9848
LEAShoots from the seedlings (10 cm shoot stage)72.262397.500181.660375.0161
INF1Young developing inflorescences (5mm)38.307837.27238.187331.3722
INF2Developing inflorescences (1-1.5 cm)43.766443.534946.879847.5408
ROORoots from the seedlings (10 cm shoot stage)56.235592.558496.5199110.009
NODDeveloping tillers at six leaf stage, 3rd internode52.676136.60444.4734148.031
CAR5Developing grain, bracts removed (5 DPA)44.940746.462242.416842.5619
CAR15Developing grain, bracts removed (15 DPA)97.427195.723165.7232193.731



CDS Structure of MLOC_38808






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38808.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356586NoneNoneNoneNone
MLOC_38808.1CUST_2505_PI427708080AvailableAvailablecontig_2551437 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g35130.2 +2 2e-162 468 269/330 (82%) 13102.m03811 protein AIG1, putative, expressed
TAIR PP10 AT1G33970.5 +2 4e-76 246 131/293 (45%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:12349614-12350960 REVERSE LENGTH=342