MLOC_38744 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains807.528422.705448.66577.105
LEAShoots from the seedlings (10 cm shoot stage)266.375136.221227.27192.608
INF1Young developing inflorescences (5mm)716.45812.804899.738745.524
INF2Developing inflorescences (1-1.5 cm)558.295577.894651.201722.937
ROORoots from the seedlings (10 cm shoot stage)567.93395.833424.513570.269
NODDeveloping tillers at six leaf stage, 3rd internode52.867473.2192158.371306.754
CAR5Developing grain, bracts removed (5 DPA)387.816417.824357.758428.112
CAR15Developing grain, bracts removed (15 DPA)194.198171.485161.807438.046



CDS Structure of MLOC_38744






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38744.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38744.1CUST_5411_PI427708083AvailableAvailablecontig_2551251 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g36160.1 +2 4e-69 211 101/114 (89%) 13106.m03735 protein 40S ribosomal protein S24, putative, expressed
TAIR PP10 AT3G04920.1 +2 2e-67 206 98/114 (86%) Ribosomal protein S24e family protein | chr3:1360989-1362065 FORWARD LENGTH=133