MLOC_38739 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.063939800.119776
LEAShoots from the seedlings (10 cm shoot stage)00.1783900.184812
INF1Young developing inflorescences (5mm)0.02466330.02882640.03013860.0247682
INF2Developing inflorescences (1-1.5 cm)0.05200810.025040.06146430.0591499
ROORoots from the seedlings (10 cm shoot stage)0.142125000.095364
NODDeveloping tillers at six leaf stage, 3rd internode3.55949.576390.032967317.4231
CAR5Developing grain, bracts removed (5 DPA)394.459468.942461.197433.195
CAR15Developing grain, bracts removed (15 DPA)0.06517230.1022910.03117290.196625



CDS Structure of MLOC_38739






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38739.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376139NoneNoneNoneNone
MLOC_38739.1CUST_2498_PI427708080AvailableAvailablecontig_2551242 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g32580.1 +2 0.0 575 282/342 (82%) 13110.m02846 protein GDSL-like lipase/acylhydrolase, putative, expressed
TAIR PP10 AT3G04290.1 +2 3e-169 488 232/341 (68%) | Symbols: ATLTL1, LTL1 | Li-tolerant lipase 1 | chr3:1133620-1136223 REVERSE LENGTH=366