MLOC_3873 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.59711.94349.415044.53328
LEAShoots from the seedlings (10 cm shoot stage)30.684441.123641.336919.7017
INF1Young developing inflorescences (5mm)5.588427.5254310.34313.60404
INF2Developing inflorescences (1-1.5 cm)4.880764.877845.11723.64389
ROORoots from the seedlings (10 cm shoot stage)0.8240270.7305954.172590.73701
NODDeveloping tillers at six leaf stage, 3rd internode6.170486.024936.5735812.5625
CAR5Developing grain, bracts removed (5 DPA)4.825234.880475.097662.96437
CAR15Developing grain, bracts removed (15 DPA)1.807312.370120.3810252.52005



CDS Structure of MLOC_3873






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3873.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3873.2CUST_12279_PI427708083AvailableAvailablecontig_134107 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g21820.1 -3 7e-39 143 71/80 (89%) 13101.m02319 protein preprotein translocase subunit secA, chloroplast precursor, putative, expressed
TAIR PP10 AT4G01800.1 -3 4e-37 137 66/83 (80%) | Symbols: AGY1, AtcpSecA, SECA1 | Albino or Glassy Yellow 1 | chr4:770926-776131 REVERSE LENGTH=1022