MLOC_38685 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains372.637281.527255.114304.451
LEAShoots from the seedlings (10 cm shoot stage)142.18982.256287.090689.092
INF1Young developing inflorescences (5mm)385.702402.026354.241337.56
INF2Developing inflorescences (1-1.5 cm)254.339246.838231.296281.004
ROORoots from the seedlings (10 cm shoot stage)202.4261.104283.806322.082
NODDeveloping tillers at six leaf stage, 3rd internode18.999414.531330.399559.5693
CAR5Developing grain, bracts removed (5 DPA)200.862202.809198.467207.991
CAR15Developing grain, bracts removed (15 DPA)44.027648.357741.4857106.874



CDS Structure of MLOC_38685






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38685.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38685.1CUST_11689_PI427708080AvailableAvailablecontig_2551099 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g27760.1 -2 1e-85 256 127/130 (98%) 13102.m03029 protein 40S ribosomal protein S15a, putative, expressed
TAIR PP10 AT5G59850.1 -2 8e-88 261 129/130 (99%) Ribosomal protein S8 family protein | chr5:24112499-24113084 REVERSE LENGTH=130