MLOC_38677 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.747431.276732.035841.65136
LEAShoots from the seedlings (10 cm shoot stage)2.063622.442133.629692.28686
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.1251930.03988100.114192
ROORoots from the seedlings (10 cm shoot stage)4.528051.928273.425922.75175
NODDeveloping tillers at six leaf stage, 3rd internode9.421425.32932.9282812.787
CAR5Developing grain, bracts removed (5 DPA)0.7435130.6018281.244940.939003
CAR15Developing grain, bracts removed (15 DPA)0.0363720.042186600.136391



CDS Structure of MLOC_38677






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38677.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38677.1CUST_11687_PI427708080AvailableAvailablecontig_2551079 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g42190.1 +1 2e-90 272 159/201 (79%) 13105.m04486 protein NADPH-dependent FMN reductase domain containing protein, expressed
TAIR PP10 AT4G27270.1 +1 3e-84 256 144/201 (72%) Quinone reductase family protein | chr4:13661458-13663243 REVERSE LENGTH=205