MLOC_38658 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)4.0999718.037825.794115.5735
INF1Young developing inflorescences (5mm)0.0339359000.0310881
INF2Developing inflorescences (1-1.5 cm)0.05261170.67887800.650662
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode00.011342100.101922
CAR5Developing grain, bracts removed (5 DPA)0.02098940.04004250.3292080.159492
CAR15Developing grain, bracts removed (15 DPA)0.03079450.052924400.153214



CDS Structure of MLOC_38658






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38658.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368662NoneNoneNoneNone
MLOC_38658.1CUST_2496_PI427708080AvailableAvailablecontig_2551039 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g20284.1 +2 0.0 708 337/457 (74%) 13109.m01920 protein amine oxidase, flavin-containing, domain containing protein, expressed
TAIR PP10 AT5G13700.1 +2 3e-141 423 212/451 (47%) | Symbols: ATPAO1, APAO, PAO1 | polyamine oxidase 1 | chr5:4420222-4422974 REVERSE LENGTH=472