MLOC_38617 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6357730.3555230.3222750.44151
LEAShoots from the seedlings (10 cm shoot stage)0.2807260.0539160.210070.160067
INF1Young developing inflorescences (5mm)0.1387190.1348920.1474560.128827
INF2Developing inflorescences (1-1.5 cm)0.1675430.1348560.1989360.193428
ROORoots from the seedlings (10 cm shoot stage)00.1393940.479260.324931
NODDeveloping tillers at six leaf stage, 3rd internode0.8051950.9160150.08330882.22186
CAR5Developing grain, bracts removed (5 DPA)0.1921920.1836580.2165670.215123
CAR15Developing grain, bracts removed (15 DPA)0.07706520.0688490.0283550.181721



CDS Structure of MLOC_38617






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38617.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38617.1CUST_11677_PI427708080AvailableAvailablecontig_2550899 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g05450.1 -1 7e-46 163 94/147 (64%) 13103.m00589 protein expressed protein
TAIR PP10 AT2G46000.1 -1 3e-17 82 49/119 (41%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mesoderm development candidate 2 (InterPro:IPR019330); Has 31 Blast hits to 31 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18921194-18922047 REVERSE LENGTH=208