MLOC_38606 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3312670.9901671.113490.667848
LEAShoots from the seedlings (10 cm shoot stage)6.5399320.337220.873611.531
INF1Young developing inflorescences (5mm)1.428291.739031.866171.09507
INF2Developing inflorescences (1-1.5 cm)1.167771.294371.673831.16812
ROORoots from the seedlings (10 cm shoot stage)00.2081900.480237
NODDeveloping tillers at six leaf stage, 3rd internode2.684931.861861.70055.66287
CAR5Developing grain, bracts removed (5 DPA)1.926522.5262.895261.80992
CAR15Developing grain, bracts removed (15 DPA)1.506280.5809970.1718151.89347



CDS Structure of MLOC_38606






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38606.10
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38606.10CUST_12273_PI427708083AvailableAvailablecontig_2550876 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g37940.1 +2 2e-41 148 79/110 (72%) 13108.m04009 protein HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed
TAIR PP10 AT4G39970.1 +2 3e-33 125 61/77 (79%) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:18536678-18538429 REVERSE LENGTH=316