MLOC_38571 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.369845.313665.359734.87916
LEAShoots from the seedlings (10 cm shoot stage)7.268677.316716.442355.65702
INF1Young developing inflorescences (5mm)9.1823710.754312.10337.80836
INF2Developing inflorescences (1-1.5 cm)13.751113.015911.872212.9723
ROORoots from the seedlings (10 cm shoot stage)3.23394.959864.053325.15569
NODDeveloping tillers at six leaf stage, 3rd internode3.813425.778268.4655720.0746
CAR5Developing grain, bracts removed (5 DPA)8.187577.304888.578436.96723
CAR15Developing grain, bracts removed (15 DPA)8.278627.980346.6009116.0497



CDS Structure of MLOC_38571






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38571.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38571.1CUST_5382_PI427708083AvailableAvailablecontig_2550790 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g51520.2 -1 5e-77 273 139/189 (74%) 13103.m05607 protein fip1 motif family protein, expressed
TAIR PP10 AT5G58040.1 -1 1e-18 91 63/173 (36%) | Symbols: ATFIP1[V], FIPS5, ATFIPS5, FIP1[V] | homolog of yeast FIP1 [V] | chr5:23488865-23494000 FORWARD LENGTH=1196