MLOC_38557 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.958944.389274.546733.89097
LEAShoots from the seedlings (10 cm shoot stage)3.807954.307483.811643.27803
INF1Young developing inflorescences (5mm)7.503297.528898.473546.28469
INF2Developing inflorescences (1-1.5 cm)6.951766.277166.940417.03115
ROORoots from the seedlings (10 cm shoot stage)3.16634.642036.305525.28382
NODDeveloping tillers at six leaf stage, 3rd internode2.761711.40892.313015.09058
CAR5Developing grain, bracts removed (5 DPA)4.204933.956794.571373.90026
CAR15Developing grain, bracts removed (15 DPA)2.121831.858042.351194.62186



CDS Structure of MLOC_38557






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38557.8
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38557.8CUST_11668_PI427708080AvailableAvailablecontig_2550732 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g36250.1 +1 0.0 1185 594/787 (75%) 13110.m03276 protein tetratricopeptide repeat, putative, expressed
TAIR PP10 AT1G33400.1 +1 0.0 555 314/796 (39%) | Symbols: TPR9 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:12104891-12109488 REVERSE LENGTH=798