MLOC_38555 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains86.929177.872978.76978.8578
LEAShoots from the seedlings (10 cm shoot stage)53.590748.084543.894340.5923
INF1Young developing inflorescences (5mm)56.022257.640561.879547.7638
INF2Developing inflorescences (1-1.5 cm)37.201745.356142.804746.0367
ROORoots from the seedlings (10 cm shoot stage)70.430783.746786.674696.6584
NODDeveloping tillers at six leaf stage, 3rd internode83.37358.985850.2674190.602
CAR5Developing grain, bracts removed (5 DPA)50.671353.646451.958751.0128
CAR15Developing grain, bracts removed (15 DPA)20.715318.460816.225543.9433



CDS Structure of MLOC_38555






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38555.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363141NoneNoneNoneNone
MLOC_38555.1CUST_2486_PI427708080AvailableAvailablecontig_2550708 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g32800.2 -1 0.0 613 300/383 (78%) 13101.m03307 protein proteasome subunit, putative, expressed
TAIR PP10 AT4G19006.1 -1 0.0 588 283/385 (74%) Proteasome component (PCI) domain protein | chr4:10409349-10411347 REVERSE LENGTH=386