- Predicted Gene MLOC_38537
MLOC_38537 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_38537_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 8.19438 | 9.83922 | 9.67387 | 9.71602 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 14.1234 | 11.2364 | 9.97358 | 10.3378 |
INF1 | Young developing inflorescences (5mm) | 15.1314 | 17.2 | 16.0719 | 13.8522 |
INF2 | Developing inflorescences (1-1.5 cm) | 27.2837 | 24.2292 | 26.2403 | 28.7092 |
ROO | Roots from the seedlings (10 cm shoot stage) | 14.8732 | 19.767 | 14.0319 | 23.2648 |
NOD | Developing tillers at six leaf stage, 3rd internode | 15.4541 | 20.5805 | 15.3933 | 69.3406 |
CAR5 | Developing grain, bracts removed (5 DPA) | 12.6173 | 11.8844 | 10.5427 | 11.7409 |
CAR15 | Developing grain, bracts removed (15 DPA) | 9.08303 | 9.40077 | 9.6408 | 21.2525 |
CDS Structure of MLOC_38537
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_38537.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os10g36950.1 |
+2 |
0.0 |
623 |
327/458 (71%) |
13110.m03351 protein DUF677 domain containing protein, putative, expressed |
TAIR PP10 |
AT2G46080.1 |
+2 |
1e-83 |
270 |
141/279 (51%) |
CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18948317-18949360 REVERSE LENGTH=347 |