MLOC_38537 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.194389.839229.673879.71602
LEAShoots from the seedlings (10 cm shoot stage)14.123411.23649.9735810.3378
INF1Young developing inflorescences (5mm)15.131417.216.071913.8522
INF2Developing inflorescences (1-1.5 cm)27.283724.229226.240328.7092
ROORoots from the seedlings (10 cm shoot stage)14.873219.76714.031923.2648
NODDeveloping tillers at six leaf stage, 3rd internode15.454120.580515.393369.3406
CAR5Developing grain, bracts removed (5 DPA)12.617311.884410.542711.7409
CAR15Developing grain, bracts removed (15 DPA)9.083039.400779.640821.2525



CDS Structure of MLOC_38537






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38537.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373331NoneNoneNoneNone
MLOC_38537.1CUST_2484_PI427708080AvailableAvailablecontig_2550675 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g36950.1 +2 0.0 623 327/458 (71%) 13110.m03351 protein DUF677 domain containing protein, putative, expressed
TAIR PP10 AT2G46080.1 +2 1e-83 270 141/279 (51%) CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18948317-18949360 REVERSE LENGTH=347