MLOC_38535 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains48.213350.059152.952247.9571
LEAShoots from the seedlings (10 cm shoot stage)37.639134.382348.776633.667
INF1Young developing inflorescences (5mm)35.066836.068634.752128.7633
INF2Developing inflorescences (1-1.5 cm)33.968432.513234.767534.919
ROORoots from the seedlings (10 cm shoot stage)100.80684.373477.696299.7356
NODDeveloping tillers at six leaf stage, 3rd internode87.920560.689631.6502173.391
CAR5Developing grain, bracts removed (5 DPA)29.267726.962328.125925.7743
CAR15Developing grain, bracts removed (15 DPA)5.460496.062616.5295612.9652



CDS Structure of MLOC_38535






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38535.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250067.1NoneNoneNoneNone
MLOC_38535.3CUST_2483_PI427708080AvailableAvailablecontig_2550672 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g44330.1 +3 0.0 1144 575/633 (91%) 13108.m04807 protein peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed
TAIR PP10 AT3G44600.1 +3 0.0 1009 481/592 (81%) | Symbols: CYP71 | cyclophilin71 | chr3:16165368-16169201 REVERSE LENGTH=631