MLOC_38517 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains34.523227.765727.351426.5695
LEAShoots from the seedlings (10 cm shoot stage)24.970934.93956.323327.8101
INF1Young developing inflorescences (5mm)0.07663160.04480880.07109010.0534744
INF2Developing inflorescences (1-1.5 cm)0.07706120.09556120.0234310.0823358
ROORoots from the seedlings (10 cm shoot stage)88.449991.537541.40779.3521
NODDeveloping tillers at six leaf stage, 3rd internode0.1795050.03081320.07513990.0941548
CAR5Developing grain, bracts removed (5 DPA)00.023615300.0253966
CAR15Developing grain, bracts removed (15 DPA)0.01813020.063772300.120754



CDS Structure of MLOC_38517






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38517.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249548.1NoneNoneNoneNone
MLOC_38517.1CUST_2481_PI427708080AvailableAvailablecontig_2550648 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g39350.1 +3 0.0 791 430/536 (80%) 13107.m04076 protein transporter family protein, putative, expressed
TAIR PP10 AT3G18830.1 +3 0.0 625 336/498 (67%) | Symbols: ATPLT5, PMT5, ATPMT5 | polyol/monosaccharide transporter 5 | chr3:6489000-6491209 REVERSE LENGTH=539