MLOC_38476 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains278.674215.213265.219244.874
LEAShoots from the seedlings (10 cm shoot stage)1222.3849.01934.345819.834
INF1Young developing inflorescences (5mm)1.16721.034151.471521.10633
INF2Developing inflorescences (1-1.5 cm)4.698073.225858.240185.62245
ROORoots from the seedlings (10 cm shoot stage)29.531671.918825.682171.988
NODDeveloping tillers at six leaf stage, 3rd internode215.059498.39440.20951081.43
CAR5Developing grain, bracts removed (5 DPA)1326.571775.011412.241562.78
CAR15Developing grain, bracts removed (15 DPA)174.465118.781188.359402.165



CDS Structure of MLOC_38476






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38476.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250989.1NoneNoneNoneNone
MLOC_38476.1CUST_2479_PI427708080AvailableAvailablecontig_2550546 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g02340.1 +2 4e-41 141 65/95 (68%) 13112.m00164 protein LTPL14 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
TAIR PP10 AT5G59320.1 +2 5e-31 114 49/93 (53%) | Symbols: LTP3 | lipid transfer protein 3 | chr5:23929051-23929492 FORWARD LENGTH=115