- Predicted Gene MLOC_38475
MLOC_38475 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_38475_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_38475_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 5.12911 | 4.36776 | 4.90565 | 4.6285 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 3.48331 | 3.15036 | 4.21895 | 2.98039 |
INF1 | Young developing inflorescences (5mm) | 3.36352 | 3.81539 | 4.037 | 3.00486 |
INF2 | Developing inflorescences (1-1.5 cm) | 3.37685 | 4.57974 | 4.27744 | 4.37826 |
ROO | Roots from the seedlings (10 cm shoot stage) | 4.78643 | 4.85132 | 4.07525 | 5.50685 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.9992 | 3.75446 | 4.29743 | 11.5198 |
CAR5 | Developing grain, bracts removed (5 DPA) | 2.32612 | 2.54371 | 1.92621 | 2.20719 |
CAR15 | Developing grain, bracts removed (15 DPA) | 4.47856 | 4.51894 | 4.91204 | 10.1815 |
CDS Structure of MLOC_38475
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_38475.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g52580.1 |
-3 |
7e-82 |
265 |
167/237 (70%) |
13104.m05393 protein tetratricopeptide repeat domain containing protein |
TAIR PP10 |
AT1G56090.1 |
-3 |
4e-58 |
199 |
140/293 (48%) |
Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:20977989-20979185 REVERSE LENGTH=272 |