MLOC_3847 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.016175.423866.061446.60195
LEAShoots from the seedlings (10 cm shoot stage)5.572114.052963.814164.13859
INF1Young developing inflorescences (5mm)7.940068.843748.037628.41696
INF2Developing inflorescences (1-1.5 cm)10.251110.441612.380914.3428
ROORoots from the seedlings (10 cm shoot stage)7.044577.794457.5622811.66
NODDeveloping tillers at six leaf stage, 3rd internode7.645067.311245.9962925.1655
CAR5Developing grain, bracts removed (5 DPA)10.406811.192510.435312.9875
CAR15Developing grain, bracts removed (15 DPA)3.121092.634594.076989.00637



CDS Structure of MLOC_3847






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3847.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3847.3CUST_12268_PI427708083AvailableAvailablecontig_133918 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g35670.1 +2 2e-40 145 67/101 (66%) 13110.m03210 protein zinc finger, RING-type, putative, expressed
TAIR PP10 AT3G47160.1 +2 2e-35 131 64/110 (58%) RING/U-box superfamily protein | chr3:17360238-17361879 REVERSE LENGTH=245