MLOC_38450 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.973174.547843.788264.30206
LEAShoots from the seedlings (10 cm shoot stage)1.21290.5846871.250930.832252
INF1Young developing inflorescences (5mm)0.088994600.05594880.0606164
INF2Developing inflorescences (1-1.5 cm)0.2603460.3281790.1631480.28857
ROORoots from the seedlings (10 cm shoot stage)0.5373181.027262.142591.19284
NODDeveloping tillers at six leaf stage, 3rd internode1.166494.452060.055468610.1755
CAR5Developing grain, bracts removed (5 DPA)2.061983.040371.343982.13116
CAR15Developing grain, bracts removed (15 DPA)00.04917220.1933990.241612



CDS Structure of MLOC_38450






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38450.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38450.1CUST_11652_PI427708080AvailableAvailablecontig_2550487 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g37400.1 -1 2e-53 176 97/138 (70%) 13109.m03710 protein OsSAUR45 - Auxin-responsive SAUR gene family member
TAIR PP10 AT1G29430.1 -1 2e-16 76 43/104 (41%) SAUR-like auxin-responsive protein family | chr1:10302801-10303226 REVERSE LENGTH=141