- Predicted Gene MLOC_38414
MLOC_38414 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 4.23781 | 4.00521 | 4.4327 | 4.77041 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 74.1073 | 156.783 | 127.89 | 116.775 |
| INF1 | Young developing inflorescences (5mm) | 5.14102 | 4.89806 | 6.42167 | 5.33791 |
| INF2 | Developing inflorescences (1-1.5 cm) | 3.18598 | 3.97267 | 4.13641 | 4.69754 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 0.0601498 | 0.77767 | 1.43666 | 1.08961 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 20.8975 | 26.3752 | 49.782 | 106.753 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 8.86162 | 10.0156 | 8.67744 | 10.5838 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 4.16884 | 4.18776 | 3.14507 | 10.5335 |
CDS Structure of MLOC_38414
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_38414.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os01g59080.1 |
+3 |
5e-48 |
163 |
136/210 (65%) |
13101.m06275 protein expressed protein |
| TAIR PP10 |
AT3G17930.1 |
+3 |
2e-28 |
109 |
67/111 (60%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3007 (InterPro:IPR021562); Has 236 Blast hits to 236 proteins in 83 species: Archae - 0; Bacteria - 117; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr3:6142307-6143246 REVERSE LENGTH=190 |
