MLOC_38413 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.7731940.8999461.217460.933047
LEAShoots from the seedlings (10 cm shoot stage)13.233421.668323.583216.0796
INF1Young developing inflorescences (5mm)1.199160.8690371.056310.908978
INF2Developing inflorescences (1-1.5 cm)0.3980820.57940.6665450.602798
ROORoots from the seedlings (10 cm shoot stage)0.1235740.06839350.2202280.09464
NODDeveloping tillers at six leaf stage, 3rd internode7.297086.4432414.00523.4395
CAR5Developing grain, bracts removed (5 DPA)2.418332.729172.435072.52845
CAR15Developing grain, bracts removed (15 DPA)0.3952590.4621750.2704540.960529



CDS Structure of MLOC_38413






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38413.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355989NoneNoneNoneNone
MLOC_38413.2CUST_2471_PI427708080AvailableAvailablecontig_2550419 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g59090.1 +2 5e-116 360 208/276 (75%) 13101.m06276 protein thylakoid lumenal 20 kDa protein, putative, expressed
TAIR PP10 AT3G56650.1 +2 2e-103 326 152/195 (78%) Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr3:20984807-20985913 FORWARD LENGTH=262