- Predicted Gene MLOC_38340
MLOC_38340 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_38340_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_38340_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 19.5334 | 13.4052 | 17.4271 | 14.0615 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 18.9311 | 3.50804 | 4.01082 | 7.65634 |
INF1 | Young developing inflorescences (5mm) | 16.4701 | 16.9649 | 18.6006 | 12.2256 |
INF2 | Developing inflorescences (1-1.5 cm) | 6.23655 | 5.6889 | 4.78351 | 5.52966 |
ROO | Roots from the seedlings (10 cm shoot stage) | 9.48896 | 17.6648 | 15.4886 | 16.51 |
NOD | Developing tillers at six leaf stage, 3rd internode | 47.8091 | 35.6107 | 32.7797 | 107.105 |
CAR5 | Developing grain, bracts removed (5 DPA) | 2.78683 | 3.25971 | 3.23802 | 2.56667 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.899551 | 1.03954 | 0.79179 | 1.79652 |
CDS Structure of MLOC_38340
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_38340.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os09g30230.1 |
+2 |
4e-121 |
360 |
187/331 (56%) |
13109.m03018 protein disease resistance protein RPM1, putative, expressed |
TAIR PP10 |
AT3G07040.1 |
+2 |
2e-43 |
163 |
106/356 (30%) |
| Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926 |