MLOC_38340 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.533413.405217.427114.0615
LEAShoots from the seedlings (10 cm shoot stage)18.93113.508044.010827.65634
INF1Young developing inflorescences (5mm)16.470116.964918.600612.2256
INF2Developing inflorescences (1-1.5 cm)6.236555.68894.783515.52966
ROORoots from the seedlings (10 cm shoot stage)9.4889617.664815.488616.51
NODDeveloping tillers at six leaf stage, 3rd internode47.809135.610732.7797107.105
CAR5Developing grain, bracts removed (5 DPA)2.786833.259713.238022.56667
CAR15Developing grain, bracts removed (15 DPA)0.8995511.039540.791791.79652



CDS Structure of MLOC_38340






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38340.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38340.1CUST_11635_PI427708080AvailableAvailablecontig_2550230 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g30230.1 +2 4e-121 360 187/331 (56%) 13109.m03018 protein disease resistance protein RPM1, putative, expressed
TAIR PP10 AT3G07040.1 +2 2e-43 163 106/356 (30%) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926