MLOC_38338 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5569850.2864070.382470.322117
LEAShoots from the seedlings (10 cm shoot stage)0.5372610.2177410.5262120.299687
INF1Young developing inflorescences (5mm)1.040410.7216161.336460.755655
INF2Developing inflorescences (1-1.5 cm)1.309711.702050.6825741.24006
ROORoots from the seedlings (10 cm shoot stage)1.235710.4185360.7582150.53484
NODDeveloping tillers at six leaf stage, 3rd internode0.2735260.4892070.49361.08344
CAR5Developing grain, bracts removed (5 DPA)0.7223551.265630.9895790.800036
CAR15Developing grain, bracts removed (15 DPA)0.1259130.05028410.120190.218031



CDS Structure of MLOC_38338






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38338.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38338.1CUST_5351_PI427708083AvailableAvailablecontig_2550223 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g45060.1 +2 5e-45 158 107/133 (80%) 13105.m04781 protein RING-H2 finger protein ATL2M, putative, expressed
TAIR PP10 AT2G46160.1 +2 2e-28 112 75/134 (56%) RING/U-box superfamily protein | chr2:18963109-18963753 FORWARD LENGTH=214