MLOC_38318 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1227480.046852900.0933277
LEAShoots from the seedlings (10 cm shoot stage)0.07728540.17457200.159927
INF1Young developing inflorescences (5mm)00.13364900.155511
INF2Developing inflorescences (1-1.5 cm)0.7031942.558462.94472.46031
ROORoots from the seedlings (10 cm shoot stage)0.116560.17492700.326963
NODDeveloping tillers at six leaf stage, 3rd internode00.09124270.03238220.368267
CAR5Developing grain, bracts removed (5 DPA)52.215486.468675.072676.5235
CAR15Developing grain, bracts removed (15 DPA)126.631130.70286.6567322.903



CDS Structure of MLOC_38318






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38318.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38318.1CUST_17661_PI427708080AvailableAvailablecontig_2550179 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g01320.1 +3 6e-17 79 64/86 (74%) 13103.m00048 protein LTPL116 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
TAIR PP10 AT1G62510.1 +3 4e-16 75 63/84 (75%) Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr1:23136632-23137081 REVERSE LENGTH=149