MLOC_38307 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.212214.31514.190415.3618
LEAShoots from the seedlings (10 cm shoot stage)18.866511.123712.78912.4676
INF1Young developing inflorescences (5mm)17.916714.806716.14514.6184
INF2Developing inflorescences (1-1.5 cm)8.295128.430239.6323810.1384
ROORoots from the seedlings (10 cm shoot stage)2.145153.603814.715094.5397
NODDeveloping tillers at six leaf stage, 3rd internode1.09231.031262.251094.04103
CAR5Developing grain, bracts removed (5 DPA)8.809947.715698.400958.72708
CAR15Developing grain, bracts removed (15 DPA)0.7640940.8686390.4394771.85189



CDS Structure of MLOC_38307






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38307.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249267.1NoneNoneNoneNone
MLOC_38307.2CUST_2463_PI427708080AvailableAvailablecontig_2550159 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g01950.1 -1 4e-123 365 219/276 (79%) 13112.m00119 protein expressed protein
TAIR PP10 AT1G21600.2 -1 5e-89 278 158/252 (63%) | Symbols: PTAC6 | plastid transcriptionally active 6 | chr1:7571514-7573782 REVERSE LENGTH=328