- Predicted Gene MLOC_38307
MLOC_38307 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 14.2122 | 14.315 | 14.1904 | 15.3618 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 18.8665 | 11.1237 | 12.789 | 12.4676 |
INF1 | Young developing inflorescences (5mm) | 17.9167 | 14.8067 | 16.145 | 14.6184 |
INF2 | Developing inflorescences (1-1.5 cm) | 8.29512 | 8.43023 | 9.63238 | 10.1384 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.14515 | 3.60381 | 4.71509 | 4.5397 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.0923 | 1.03126 | 2.25109 | 4.04103 |
CAR5 | Developing grain, bracts removed (5 DPA) | 8.80994 | 7.71569 | 8.40095 | 8.72708 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.764094 | 0.868639 | 0.439477 | 1.85189 |
CDS Structure of MLOC_38307
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_38307.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os12g01950.1 |
-1 |
4e-123 |
365 |
219/276 (79%) |
13112.m00119 protein expressed protein |
TAIR PP10 |
AT1G21600.2 |
-1 |
5e-89 |
278 |
158/252 (63%) |
| Symbols: PTAC6 | plastid transcriptionally active 6 | chr1:7571514-7573782 REVERSE LENGTH=328 |