MLOC_38276 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains25.546222.054322.130223.2649
LEAShoots from the seedlings (10 cm shoot stage)18.529813.48816.696113.3223
INF1Young developing inflorescences (5mm)37.45637.51633.791431.8113
INF2Developing inflorescences (1-1.5 cm)33.903437.22532.335238.7947
ROORoots from the seedlings (10 cm shoot stage)23.459324.607721.319727.3593
NODDeveloping tillers at six leaf stage, 3rd internode10.880214.240817.90244.1363
CAR5Developing grain, bracts removed (5 DPA)36.190637.311736.885236.0744
CAR15Developing grain, bracts removed (15 DPA)14.610413.968612.497534.0368



CDS Structure of MLOC_38276






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38276.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358632NoneNoneNoneNone
MLOC_38276.2CUST_2458_PI427708080AvailableAvailablecontig_2550087 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g42820.3 -2 5e-96 309 224/254 (88%) 13101.m15050 protein RNA recognition motif containing protein, putative, expressed
TAIR PP10 AT3G15010.2 -2 2e-64 222 116/176 (66%) RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:5052844-5054058 FORWARD LENGTH=404