MLOC_38270 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.379320.5446160.5144210.492453
LEAShoots from the seedlings (10 cm shoot stage)1.206630.3015470.5269460.600079
INF1Young developing inflorescences (5mm)0.921641.001351.109120.838224
INF2Developing inflorescences (1-1.5 cm)1.633771.646291.689221.80543
ROORoots from the seedlings (10 cm shoot stage)0.6532030.8622071.816111.07562
NODDeveloping tillers at six leaf stage, 3rd internode00.02184520.04662610.126756
CAR5Developing grain, bracts removed (5 DPA)0.6763340.8825391.227070.898566
CAR15Developing grain, bracts removed (15 DPA)0.2090640.1285190.04368090.350742



CDS Structure of MLOC_38270






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38270.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38270.1CUST_11632_PI427708080AvailableAvailablecontig_2550064 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g20720.1 -3 2e-121 367 203/389 (52%) 13102.m02319 protein MBTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain
TAIR PP10 AT2G39760.1 -3 2e-69 232 132/345 (38%) | Symbols: ATBPM3, BPM3 | BTB/POZ/MATH-domains containing protein | chr2:16583213-16585983 FORWARD LENGTH=408