MLOC_38189 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains47.508657.699761.270565.3544
LEAShoots from the seedlings (10 cm shoot stage)92.484823.703529.602845.6201
INF1Young developing inflorescences (5mm)39.464641.682540.737637.7618
INF2Developing inflorescences (1-1.5 cm)52.780154.743448.965263.5519
ROORoots from the seedlings (10 cm shoot stage)32.415947.697329.611963.4066
NODDeveloping tillers at six leaf stage, 3rd internode449.402549.731416.611934.95
CAR5Developing grain, bracts removed (5 DPA)57.514354.287459.274562.0648
CAR15Developing grain, bracts removed (15 DPA)15.196512.572613.901434.8917



CDS Structure of MLOC_38189






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38189.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375736NoneNoneNoneNone
MLOC_38189.2CUST_2451_PI427708080AvailableAvailablecontig_2549888 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g64320.1 +2 0.0 793 494/729 (68%) 13103.m07146 protein expressed protein
TAIR PP10 AT5G43310.2 +2 7e-55 205 227/749 (30%) COP1-interacting protein-related | chr5:17379735-17385387 REVERSE LENGTH=1180