MLOC_38135 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains109.35655.840173.840460.6733
LEAShoots from the seedlings (10 cm shoot stage)33.4346.194139.1157412.8399
INF1Young developing inflorescences (5mm)167.582174.893189.559113.862
INF2Developing inflorescences (1-1.5 cm)104.273140.232138.018109.981
ROORoots from the seedlings (10 cm shoot stage)76.722248.024962.614351.3635
NODDeveloping tillers at six leaf stage, 3rd internode11.81714.936121.021640.7447
CAR5Developing grain, bracts removed (5 DPA)35.561735.379441.152927.9694
CAR15Developing grain, bracts removed (15 DPA)4.53312.774864.607587.24757



CDS Structure of MLOC_38135






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38135.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38135.1CUST_12253_PI427708083AvailableAvailablecontig_2549774 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g38560.1 -2 2e-17 78 39/39 (100%) 13105.m04047 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative
TAIR PP10 AT3G09480.1 -2 2e-17 77 38/39 (97%) Histone superfamily protein | chr3:2914890-2915270 REVERSE LENGTH=126