MLOC_38134 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains87.655664.805667.340178.5225
LEAShoots from the seedlings (10 cm shoot stage)51.124949.066154.101745.2555
INF1Young developing inflorescences (5mm)53.266861.512255.950851.7132
INF2Developing inflorescences (1-1.5 cm)45.590156.893352.887563.0256
ROORoots from the seedlings (10 cm shoot stage)65.881977.798979.461198.0237
NODDeveloping tillers at six leaf stage, 3rd internode87.157275.622676.1442254.537
CAR5Developing grain, bracts removed (5 DPA)62.190468.304260.44769.6447
CAR15Developing grain, bracts removed (15 DPA)27.795731.99424.634274.5418



CDS Structure of MLOC_38134






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38134.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362528NoneNoneNoneNone
MLOC_38134.2CUST_2447_PI427708080AvailableAvailablecontig_2549774 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g47446.1 +1 3e-48 167 108/116 (93%) 13105.m05025 protein expressed protein
TAIR PP10 AT1G29850.1 +1 2e-36 134 87/119 (73%) double-stranded DNA-binding family protein | chr1:10447866-10449630 FORWARD LENGTH=129