MLOC_38120 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.623123.572183.941873.08846
LEAShoots from the seedlings (10 cm shoot stage)1.919820.4257710.3383290.76389
INF1Young developing inflorescences (5mm)15.289416.518714.515610.4774
INF2Developing inflorescences (1-1.5 cm)10.622212.11869.677279.95745
ROORoots from the seedlings (10 cm shoot stage)0.6296012.795062.360492.28879
NODDeveloping tillers at six leaf stage, 3rd internode0.08092930.04352720.03247090.123349
CAR5Developing grain, bracts removed (5 DPA)2.868882.666762.641332.12379
CAR15Developing grain, bracts removed (15 DPA)0.9928570.665020.8233071.55652



CDS Structure of MLOC_38120






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38120.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38120.1CUST_11609_PI427708080AvailableAvailablecontig_2549739 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g58630.2 -2 2e-77 269 133/178 (75%) 13104.m06162 protein DNA mismatch repair protein MSH3, putative, expressed
TAIR PP10 AT4G25540.1 -2 2e-158 492 256/463 (55%) | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch repair protein MSH3 | chr4:13042700-13048115 REVERSE LENGTH=1081