- Predicted Gene MLOC_38117
MLOC_38117 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 21.341 | 22.1806 | 24.9873 | 21.8693 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 28.4489 | 27.5834 | 27.8436 | 23.3717 |
| INF1 | Young developing inflorescences (5mm) | 59.7723 | 63.4298 | 71.249 | 49.8255 |
| INF2 | Developing inflorescences (1-1.5 cm) | 75.6999 | 77.9459 | 73.524 | 80.0222 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 11.3691 | 14.5699 | 13.8733 | 16.4273 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 15.6715 | 23.6937 | 25.0217 | 77.3992 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 33.1798 | 37.5171 | 38.4248 | 33.7649 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 14.4114 | 14.8967 | 14.0606 | 30.9939 |
CDS Structure of MLOC_38117
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_38117.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g41750.1 |
-1 |
1e-34 |
139 |
91/333 (27%) |
13105.m04435 protein RecF/RecN/SMC N terminal domain containing protein, expressed |
| TAIR PP10 |
AT3G54670.2 |
-1 |
2e-157 |
465 |
237/337 (70%) |
| Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance of chromosomes (SMC) family protein | chr3:20240428-20243701 FORWARD LENGTH=453 |