MLOC_38117 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.34122.180624.987321.8693
LEAShoots from the seedlings (10 cm shoot stage)28.448927.583427.843623.3717
INF1Young developing inflorescences (5mm)59.772363.429871.24949.8255
INF2Developing inflorescences (1-1.5 cm)75.699977.945973.52480.0222
ROORoots from the seedlings (10 cm shoot stage)11.369114.569913.873316.4273
NODDeveloping tillers at six leaf stage, 3rd internode15.671523.693725.021777.3992
CAR5Developing grain, bracts removed (5 DPA)33.179837.517138.424833.7649
CAR15Developing grain, bracts removed (15 DPA)14.411414.896714.060630.9939



CDS Structure of MLOC_38117






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38117.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38117.1CUST_11608_PI427708080AvailableAvailablecontig_2549731 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g41750.1 -1 1e-34 139 91/333 (27%) 13105.m04435 protein RecF/RecN/SMC N terminal domain containing protein, expressed
TAIR PP10 AT3G54670.2 -1 2e-157 465 237/337 (70%) | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance of chromosomes (SMC) family protein | chr3:20240428-20243701 FORWARD LENGTH=453