MLOC_38100 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.8560330.845224.611218.2711
LEAShoots from the seedlings (10 cm shoot stage)33.277624.127623.343920.6123
INF1Young developing inflorescences (5mm)55.119258.102660.436239.9334
INF2Developing inflorescences (1-1.5 cm)64.454667.960860.051261.6506
ROORoots from the seedlings (10 cm shoot stage)14.270123.871817.092221.7009
NODDeveloping tillers at six leaf stage, 3rd internode15.895625.425722.014871.1805
CAR5Developing grain, bracts removed (5 DPA)32.504127.572732.796525.4004
CAR15Developing grain, bracts removed (15 DPA)31.413129.627532.007456.9156



CDS Structure of MLOC_38100






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38100.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38100.2CUST_17657_PI427708080AvailableAvailablecontig_2549699 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g40780.1 +2 0.0 1743 950/1414 (67%) 13110.m03782 protein CCR4-Not complex component, Not1domain containing protein, expressed
TAIR PP10 AT1G02080.2 +2 0.0 1182 674/1414 (48%) transcription regulators | chr1:373694-386682 FORWARD LENGTH=2377