MLOC_38053 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.9907128.911823.155320.4728
LEAShoots from the seedlings (10 cm shoot stage)22.43217.951213.237814.9918
INF1Young developing inflorescences (5mm)30.583330.967331.159923.2152
INF2Developing inflorescences (1-1.5 cm)32.359833.86429.276831.7901
ROORoots from the seedlings (10 cm shoot stage)11.050621.431214.706821.5701
NODDeveloping tillers at six leaf stage, 3rd internode8.7850210.62249.1366433.4306
CAR5Developing grain, bracts removed (5 DPA)22.336618.89920.092417.5386
CAR15Developing grain, bracts removed (15 DPA)9.029857.9580710.698417.5121



CDS Structure of MLOC_38053






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38053.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38053.1CUST_11597_PI427708080AvailableAvailablecontig_2549616 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g04030.1 +2 0.0 556 280/303 (92%) 13112.m00377 protein HEAT repeat family protein, putative, expressed
TAIR PP10 AT2G26780.1 +2 4e-158 489 236/303 (78%) ARM repeat superfamily protein | chr2:11410125-11423598 FORWARD LENGTH=1826