MLOC_38048 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains46.07429.741733.813637.4755
LEAShoots from the seedlings (10 cm shoot stage)18.522220.120726.369919.7611
INF1Young developing inflorescences (5mm)30.584831.564325.541826.2428
INF2Developing inflorescences (1-1.5 cm)26.40117.946319.471723.9402
ROORoots from the seedlings (10 cm shoot stage)36.650830.842532.72342.2317
NODDeveloping tillers at six leaf stage, 3rd internode3.297842.809637.4929912.1466
CAR5Developing grain, bracts removed (5 DPA)22.624826.165329.123627.0426
CAR15Developing grain, bracts removed (15 DPA)9.150439.44236.1554220.5891



CDS Structure of MLOC_38048






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38048.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252377.1NoneNoneNoneNone
MLOC_38048.1CUST_2445_PI427708080AvailableAvailablecontig_2549606 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g53280.2 -2 1e-78 238 116/122 (95%) 13101.m05581 protein 50S ribosomal protein L20, putative, expressed
TAIR PP10 AT1G16740.1 -2 2e-67 209 103/124 (83%) Ribosomal protein L20 | chr1:5727773-5728950 FORWARD LENGTH=126