MLOC_38032 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.44759.7630510.389410.7495
LEAShoots from the seedlings (10 cm shoot stage)8.351152.866043.705154.38815
INF1Young developing inflorescences (5mm)5.474526.4477.603254.95955
INF2Developing inflorescences (1-1.5 cm)4.766546.26016.12216.13063
ROORoots from the seedlings (10 cm shoot stage)12.32669.960548.1336412.3583
NODDeveloping tillers at six leaf stage, 3rd internode40.899544.576744.0648147.436
CAR5Developing grain, bracts removed (5 DPA)7.10937.834467.961797.28482
CAR15Developing grain, bracts removed (15 DPA)1.05820.7770471.112862.11953



CDS Structure of MLOC_38032






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38032.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38032.1CUST_5309_PI427708083AvailableAvailablecontig_2549580 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g74330.1 +1 7e-119 352 157/187 (84%) 13101.m08124 protein pectinacetylesterase domain containing protein, expressed
TAIR PP10 AT3G09410.1 +1 3e-71 228 97/178 (54%) Pectinacetylesterase family protein | chr3:2898243-2900984 REVERSE LENGTH=427