MLOC_38014 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains34.353230.2340.21126.1029
LEAShoots from the seedlings (10 cm shoot stage)40.568871.238469.466139.328
INF1Young developing inflorescences (5mm)0.4951340.1616460.2002040.215815
INF2Developing inflorescences (1-1.5 cm)0.1275320.1749220.4281080.192745
ROORoots from the seedlings (10 cm shoot stage)458.528150.615166.274207.678
NODDeveloping tillers at six leaf stage, 3rd internode27.789950.813877.1904149.434
CAR5Developing grain, bracts removed (5 DPA)0.9506940.9265050.9722410.720728
CAR15Developing grain, bracts removed (15 DPA)0.2527060.08605160.1231950.362239



CDS Structure of MLOC_38014






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38014.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38014.1CUST_12248_PI427708083AvailableAvailablecontig_2549551 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g15870.1 +3 4e-14 52 22/55 (40%) 13108.m01696 protein retrotransposon protein, putative, Ty1-copia subclass
TAIR PP10 AT3G61430.2 +1 7e-12 65 28/30 (93%) | Symbols: PIP1A, ATPIP1, PIP1, PIP1;1 | plasma membrane intrinsic protein 1A | chr3:22733657-22735113 FORWARD LENGTH=286