MLOC_38007 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains24.334721.056622.616227.7044
LEAShoots from the seedlings (10 cm shoot stage)20.20118.568818.047418.7397
INF1Young developing inflorescences (5mm)31.175636.467840.731137.0725
INF2Developing inflorescences (1-1.5 cm)35.692334.801735.535145.219
ROORoots from the seedlings (10 cm shoot stage)23.280320.452231.521734.2763
NODDeveloping tillers at six leaf stage, 3rd internode12.26129.979749.6682935.2818
CAR5Developing grain, bracts removed (5 DPA)12.439614.675412.634416.1004
CAR15Developing grain, bracts removed (15 DPA)3.356273.84943.7085310.3074



CDS Structure of MLOC_38007






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38007.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368189NoneNoneNoneNone
MLOC_38007.1CUST_2440_PI427708080AvailableAvailablecontig_2549529 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g18500.2 -3 7e-72 226 134/167 (80%) 13103.m02217 protein mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
TAIR PP10 AT3G10110.1 -3 3e-55 182 102/160 (64%) | Symbols: MEE67 | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr3:3116225-3117378 FORWARD LENGTH=173