MLOC_37953 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.86399.4937911.752111.5043
LEAShoots from the seedlings (10 cm shoot stage)29.27223.211558.404811.2424
INF1Young developing inflorescences (5mm)10.680912.448111.68589.99646
INF2Developing inflorescences (1-1.5 cm)19.179121.078816.972821.1206
ROORoots from the seedlings (10 cm shoot stage)9.665455.769268.876787.11498
NODDeveloping tillers at six leaf stage, 3rd internode2.893620.638010.2176941.42499
CAR5Developing grain, bracts removed (5 DPA)293.299352.615336.558310.929
CAR15Developing grain, bracts removed (15 DPA)37.370328.394325.126273.0433



CDS Structure of MLOC_37953






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37953.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249429.1NoneNoneNoneNone
MLOC_37953.3CUST_2434_PI427708080AvailableAvailablecontig_2549408 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g55290.1 -3 6e-44 149 62/68 (91%) 13103.m06014 protein GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed
TAIR PP10 AT2G39540.1 -3 2e-26 102 40/59 (68%) Gibberellin-regulated family protein | chr2:16500866-16501241 FORWARD LENGTH=87