MLOC_37948 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.382947.769459.733829.79986
LEAShoots from the seedlings (10 cm shoot stage)7.627758.449318.655387.63336
INF1Young developing inflorescences (5mm)7.261848.768819.102687.67191
INF2Developing inflorescences (1-1.5 cm)8.332829.325038.8597910.2912
ROORoots from the seedlings (10 cm shoot stage)3.703415.987397.768857.87646
NODDeveloping tillers at six leaf stage, 3rd internode9.321166.953514.6940823.1881
CAR5Developing grain, bracts removed (5 DPA)9.7859310.024310.782610.7276
CAR15Developing grain, bracts removed (15 DPA)3.421853.680813.685698.76905



CDS Structure of MLOC_37948






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37948.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252114.1NoneNoneNoneNone
MLOC_37948.1CUST_2433_PI427708080AvailableAvailablecontig_2549403 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g56980.1 +1 6e-91 279 149/221 (67%) 13102.m06552 protein cytidylyltransferase domain containing protein, expressed
TAIR PP10 AT5G55810.1 +1 2e-102 308 154/238 (65%) | Symbols: AtNMNAT, NMNAT | nicotinate/nicotinamide mononucleotide adenyltransferase | chr5:22584229-22586239 REVERSE LENGTH=238