MLOC_37893 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains290.193309.925311.837326.168
LEAShoots from the seedlings (10 cm shoot stage)190.015153.282130.926145.801
INF1Young developing inflorescences (5mm)149.078153.087154.291134.577
INF2Developing inflorescences (1-1.5 cm)100.657112.669110.361122.778
ROORoots from the seedlings (10 cm shoot stage)206.794243.294248.297321.907
NODDeveloping tillers at six leaf stage, 3rd internode175.635130.07571.8768473.872
CAR5Developing grain, bracts removed (5 DPA)168.66174.836180.747178.976
CAR15Developing grain, bracts removed (15 DPA)85.818376.449186.9423194.327



CDS Structure of MLOC_37893






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37893.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251050.1NoneNoneNoneNone
AK362890NoneNoneNoneNone
MLOC_37893.1CUST_2428_PI427708080AvailableAvailablecontig_2549313 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g45090.1 +1 0.0 934 475/498 (95%) 13107.m04751 protein NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed
TAIR PP10 AT5G08530.1 +1 0.0 865 433/458 (95%) | Symbols: CI51 | 51 kDa subunit of complex I | chr5:2759848-2761726 REVERSE LENGTH=486