MLOC_3789 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 4.4063 | 4.03134 | 4.1531 | 4.40651 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 9.12567 | 3.16736 | 4.48462 | 4.53052 |
| INF1 | Young developing inflorescences (5mm) | 4.36746 | 4.26484 | 3.92795 | 3.95818 |
| INF2 | Developing inflorescences (1-1.5 cm) | 2.85024 | 3.02462 | 3.04272 | 3.64343 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 8.79028 | 5.28362 | 5.90102 | 6.57943 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 5.7366 | 7.29003 | 7.79773 | 20.1787 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 7.75746 | 8.91775 | 8.29057 | 9.21357 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.673739 | 0.383512 | 0.540057 | 1.3946 |
CDS Structure of MLOC_3789
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_3789.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os08g31760.1 |
-3 |
2e-84 |
280 |
260/365 (71%) |
13108.m03292 protein expressed protein |
| TAIR PP10 |
AT4G39840.1 |
-3 |
2e-32 |
131 |
102/242 (42%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 20719 Blast hits to 6096 proteins in 607 species: Archae - 22; Bacteria - 3243; Metazoa - 4364; Fungi - 2270; Plants - 237; Viruses - 128; Other Eukaryotes - 10455 (source: NCBI BLink). | chr4:18485268-18486623 FORWARD LENGTH=451 |
