MLOC_37884 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.538116.602720.019217.2502
LEAShoots from the seedlings (10 cm shoot stage)18.924621.86627.102117.8884
INF1Young developing inflorescences (5mm)11.149611.62739.711348.79937
INF2Developing inflorescences (1-1.5 cm)13.845710.653615.49113.3745
ROORoots from the seedlings (10 cm shoot stage)55.270938.814241.773243.4282
NODDeveloping tillers at six leaf stage, 3rd internode40.521549.016953.9056137.907
CAR5Developing grain, bracts removed (5 DPA)14.918119.926818.54116.089
CAR15Developing grain, bracts removed (15 DPA)9.222469.462047.8226420.1659



CDS Structure of MLOC_37884






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37884.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_37884.1CUST_11577_PI427708080AvailableAvailablecontig_2549298 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g55980.1 +2 2e-82 246 119/134 (89%) 13102.m06427 protein vacuolar protein sorting 55 family protein, putative, expressed
TAIR PP10 AT1G32410.5 +2 6e-55 175 82/132 (62%) Vacuolar protein sorting 55 (VPS55) family protein | chr1:11694398-11695297 FORWARD LENGTH=140