MLOC_37725 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.5696118.781317.278814.8991
LEAShoots from the seedlings (10 cm shoot stage)28.185925.239819.017520.2941
INF1Young developing inflorescences (5mm)37.712840.855340.773730.7775
INF2Developing inflorescences (1-1.5 cm)33.245136.081432.272735.2451
ROORoots from the seedlings (10 cm shoot stage)8.8433313.814111.726215.0224
NODDeveloping tillers at six leaf stage, 3rd internode21.438119.68716.456864.525
CAR5Developing grain, bracts removed (5 DPA)20.571716.873519.651417.0347
CAR15Developing grain, bracts removed (15 DPA)3.751332.835244.03347.28076



CDS Structure of MLOC_37725






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37725.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_37725.2CUST_11556_PI427708080AvailableAvailablecontig_2548960 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g57210.2 +2 0.0 942 491/650 (76%) 13101.m06067 protein katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed
TAIR PP10 AT1G61210.2 +2 3e-160 495 230/321 (72%) Transducin/WD40 repeat-like superfamily protein | chr1:22564785-22571555 FORWARD LENGTH=1179