MLOC_37686 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.196624.029953.760113.383
LEAShoots from the seedlings (10 cm shoot stage)8.417356.045785.842385.81201
INF1Young developing inflorescences (5mm)51.170752.894256.172442.621
INF2Developing inflorescences (1-1.5 cm)46.545942.344539.25644.8198
ROORoots from the seedlings (10 cm shoot stage)4.548837.625966.949448.38283
NODDeveloping tillers at six leaf stage, 3rd internode0.5305530.7167921.03072.52152
CAR5Developing grain, bracts removed (5 DPA)17.854415.644114.282914.5652
CAR15Developing grain, bracts removed (15 DPA)3.755623.547652.631767.45449



CDS Structure of MLOC_37686






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37686.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_37686.4CUST_11548_PI427708080AvailableAvailablecontig_2548881 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g40830.3 +3 0.0 1024 570/1011 (56%) 13108.m04373 protein pumilio domain-containing protein PPD1, putative, expressed
TAIR PP10 AT3G20250.1 +3 1e-150 483 284/637 (45%) | Symbols: APUM5, PUM5 | pumilio 5 | chr3:7059098-7062660 REVERSE LENGTH=961