MLOC_37680 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1341.451033.411162.81352.81
LEAShoots from the seedlings (10 cm shoot stage)1077.241335.141226.471180.34
INF1Young developing inflorescences (5mm)580.996698.55767.379682.707
INF2Developing inflorescences (1-1.5 cm)717.008650.872756.331900.476
ROORoots from the seedlings (10 cm shoot stage)1648.141255.911593.591876.86
NODDeveloping tillers at six leaf stage, 3rd internode1700.711023.531138.013865.32
CAR5Developing grain, bracts removed (5 DPA)733.804856.891766.516928.482
CAR15Developing grain, bracts removed (15 DPA)372.317394.044339.5611009.42



CDS Structure of MLOC_37680






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37680.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249271.1NoneNoneNoneNone
MLOC_37680.1CUST_2397_PI427708080AvailableAvailablecontig_2548860 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g02340.1 +1 2e-45 148 69/77 (90%) 13107.m00158 protein expressed protein
TAIR PP10 AT2G23090.1 +1 3e-41 137 64/78 (82%) Uncharacterised protein family SERF | chr2:9829657-9830274 REVERSE LENGTH=78