MLOC_37672 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains24.40923.838519.754524.1318
LEAShoots from the seedlings (10 cm shoot stage)14.800412.475815.134712.3213
INF1Young developing inflorescences (5mm)29.720528.711728.624825.921
INF2Developing inflorescences (1-1.5 cm)14.675516.580117.99819.061
ROORoots from the seedlings (10 cm shoot stage)15.935517.452216.985422.3688
NODDeveloping tillers at six leaf stage, 3rd internode1.28411.451794.15886.3635
CAR5Developing grain, bracts removed (5 DPA)17.359819.619520.501920.6703
CAR15Developing grain, bracts removed (15 DPA)4.277414.442554.5240610.8575



CDS Structure of MLOC_37672






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37672.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370837NoneNoneNoneNone
MLOC_37672.1CUST_2395_PI427708080AvailableAvailablecontig_2548850 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g06474.1 +1 2e-84 260 136/150 (91%) 13108.m00660 protein ribosomal protein L13, putative
TAIR PP10 AT3G01790.2 +1 2e-70 223 118/150 (79%) Ribosomal protein L13 family protein | chr3:283880-285583 REVERSE LENGTH=205