MLOC_37615 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.38720.182723.107120.7426
LEAShoots from the seedlings (10 cm shoot stage)24.210125.41428.322922.8434
INF1Young developing inflorescences (5mm)4.844436.233897.11124.94692
INF2Developing inflorescences (1-1.5 cm)6.608258.912069.868599.0458
ROORoots from the seedlings (10 cm shoot stage)13.624918.707124.152923.2062
NODDeveloping tillers at six leaf stage, 3rd internode31.571121.19215.677571.889
CAR5Developing grain, bracts removed (5 DPA)8.639529.006919.491458.84054
CAR15Developing grain, bracts removed (15 DPA)1.657141.682222.517244.04536



CDS Structure of MLOC_37615






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37615.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK377146NoneNoneNoneNone
MLOC_37615.1CUST_2390_PI427708080AvailableAvailablecontig_2548725 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g34130.1 +1 0.0 821 416/450 (92%) 13107.m03475 protein TBC domain containing protein, expressed
TAIR PP10 AT5G54780.1 +1 0.0 563 288/442 (65%) Ypt/Rab-GAP domain of gyp1p superfamily protein | chr5:22248696-22251692 REVERSE LENGTH=432