MLOC_37523 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.387725.624821.697921.8578
LEAShoots from the seedlings (10 cm shoot stage)28.365321.163918.839821.1858
INF1Young developing inflorescences (5mm)53.988954.495350.349946.235
INF2Developing inflorescences (1-1.5 cm)85.364577.320466.522187.278
ROORoots from the seedlings (10 cm shoot stage)10.988122.140815.616527.1541
NODDeveloping tillers at six leaf stage, 3rd internode11.523919.054717.709769.5111
CAR5Developing grain, bracts removed (5 DPA)37.597331.414137.372335.4439
CAR15Developing grain, bracts removed (15 DPA)20.822420.278120.585347.1237



CDS Structure of MLOC_37523






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37523.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_37523.1CUST_11520_PI427708080AvailableAvailablecontig_2548555 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g02290.1 +3 0.0 2617 1570/1943 (81%) 13102.m00163 protein SNF2 family N-terminal domain containing protein, expressed
TAIR PP10 AT2G46020.2 +3 0.0 1812 1083/1887 (57%) | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription regulatory protein SNF2, putative | chr2:18923304-18931769 FORWARD LENGTH=2193