MLOC_37489 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains161.97961.32585.676299.8658
LEAShoots from the seedlings (10 cm shoot stage)48.68844.35338.2660919.628
INF1Young developing inflorescences (5mm)206.934188.17184.287174.369
INF2Developing inflorescences (1-1.5 cm)104.278152.372150.089160.799
ROORoots from the seedlings (10 cm shoot stage)72.221447.135870.289368.2192
NODDeveloping tillers at six leaf stage, 3rd internode1.826661.117351.491264.3855
CAR5Developing grain, bracts removed (5 DPA)68.243864.832171.081367.9202
CAR15Developing grain, bracts removed (15 DPA)2.971541.830243.910626.74705



CDS Structure of MLOC_37489






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_37489.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_37489.1CUST_5244_PI427708083AvailableAvailablecontig_2548514 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g02300.1 -1 4e-11 59 27/32 (84%) 13105.m00194 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G59870.1 -1 9e-12 60 27/32 (84%) | Symbols: HTA6 | histone H2A 6 | chr5:24115605-24116144 REVERSE LENGTH=150